Commit b42ce83f authored by Ben Taylor's avatar Ben Taylor
Browse files

Cache dependencies, add install_dependencies script

parent 33b332fe
......@@ -2,15 +2,13 @@ language: java
jdk:
- openjdk7
sudo: false
cache:
directories:
- "build"
before_install:
- "export DISPLAY=:99.0"
- "sh -e /etc/init.d/xvfb start"
- "mkdir dependencies && cd dependencies"
- "wget ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz && tar xzfv EMBOSS-6.6.0.tar.gz"
- "cd EMBOSS-6.6.0 && mkdir build && ./configure --prefix $(pwd)/build"
- "make"
- "make install"
- "export EMBOSS_ROOT=$(pwd)/build && cd ../.."
- "source install_dependencies.sh"
install:
- "make"
- "cd test"
......
#!/bin/bash
set -x
set -e
start_dir=$(pwd)
EMBOSS_VERSION="6.6.0"
EMBOSS_DOWNLOAD_URL="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EMBOSS_VERSION}.tar.gz"
# Make an install location
if [ ! -d 'build' ]; then
mkdir build
fi
cd build
build_dir=$(pwd)
# DOWNLOAD ALL THE THINGS
download () {
url=$1
download_location=$2
if [ -e $download_location ]; then
echo "Skipping download of $url, $download_location already exists"
else
echo "Downloading $url to $download_location"
wget $url -O $download_location
fi
}
download $EMBOSS_DOWNLOAD_URL "emboss-${EMBOSS_VERSION}.tgz"
# Build all the things
cd $build_dir
## Emboss
emboss_dir=$(pwd)/EMBOSS-${EMBOSS_VERSION}
if [ ! -d $emboss_dir ]; then
tar xzf emboss-${EMBOSS_VERSION}.tgz
fi
cd $emboss_dir
if [ -e "${emboss_dir}/build/bin/restrict" ]; then
echo "Already built Emboss; skipping build"
else
mkdir build
./configure --prefix ${emboss_dir}/build
make
make install
fi
export EMBOSS_ROOT=${emboss_dir}/build
cd $start_dir
set +x
set +e
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